Index

_

__init__() (whobpyt.datatypes.outputs.TrainingStats method) (whobpyt.datatypes.parameter.Parameter method) (whobpyt.datatypes.timeseries.Timeseries method) (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) (whobpyt.optimization.CostsFC method) (whobpyt.optimization.CostsFixedFC method) (whobpyt.optimization.CostsFixedPSD method) (whobpyt.optimization.CostsMean method) (whobpyt.optimization.CostsPSD method) (whobpyt.optimization.CostsTS method) (whobpyt.run.model_fitting.ModelFitting method)

A

add_module() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) appendLF() (whobpyt.datatypes.outputs.TrainingStats method) appendLoss() (whobpyt.datatypes.outputs.TrainingStats method) appendParam() (whobpyt.datatypes.outputs.TrainingStats method)

appendSC() (whobpyt.datatypes.outputs.TrainingStats method) appendSC_p2e() (whobpyt.datatypes.outputs.TrainingStats method) appendSC_p2i() (whobpyt.datatypes.outputs.TrainingStats method) appendSC_p2p() (whobpyt.datatypes.outputs.TrainingStats method) apply() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

B

bfloat16() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

buffers() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

C

calcPSD() (whobpyt.optimization.CostsFixedPSD method) (whobpyt.optimization.CostsPSD method) call_super_init (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel attribute) children() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) compile() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) Connectome-based neural mass model (CNMM) CostsFC (class in whobpyt.optimization) CostsFixedFC (class in whobpyt.optimization)

CostsFixedPSD (class in whobpyt.optimization) CostsMean (class in whobpyt.optimization) CostsPSD (class in whobpyt.optimization) CostsTS (class in whobpyt.optimization) cpu() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) createDelayIC() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) createIC() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) cuda() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

D

Distance matrix double() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

downSmoothPSD() (whobpyt.optimization.CostsPSD method) dump_patches (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel attribute)

E

eval() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) evaluate() (whobpyt.run.model_fitting.ModelFitting method)

External input / stimulus extra_repr() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

F

Fitting paradigm float() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

FNG-FPG forward() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

G

get_buffer() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) get_extra_state() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

get_parameter() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) get_submodule() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

H

half() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

I

info() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

ipu() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

J

JansenRitModel (class in whobpyt.models.jansen_rit.jansen_rit)

L

Lead field matrix length() (whobpyt.datatypes.timeseries.Timeseries method) load_state_dict() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

loss() (whobpyt.optimization.CostsFixedFC method) (whobpyt.optimization.CostsFixedPSD method) (whobpyt.optimization.CostsMean method) (whobpyt.optimization.CostsPSD method)

M

main_loss() (whobpyt.optimization.CostsFC method) (whobpyt.optimization.CostsFixedFC method) (whobpyt.optimization.CostsFixedPSD method) (whobpyt.optimization.CostsMean method) (whobpyt.optimization.CostsPSD method) (whobpyt.optimization.CostsTS method)

ModelFitting (class in whobpyt.run.model_fitting) modules() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) mtia() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

N

named_buffers() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) named_children() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) named_modules() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) named_parameters() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) Neural mass model (NMM)

npNodeByTime() (whobpyt.datatypes.timeseries.Timeseries method) npResample() (whobpyt.datatypes.timeseries.Timeseries method) npTimeByNodes() (whobpyt.datatypes.timeseries.Timeseries method) npTS() (whobpyt.datatypes.timeseries.Timeseries method) npValue() (whobpyt.datatypes.parameter.Parameter method)

O

Objective function / loss

Output variables

P

Parameter (class in whobpyt.datatypes.parameter) Parameter object parameters() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) plot_fc() (in module whobpyt.visualization) plot_psd() (in module whobpyt.visualization) plot_timeseries() (in module whobpyt.visualization) Prior loss

prior_loss() (whobpyt.optimization.CostsFC method) (whobpyt.optimization.CostsFixedFC method) (whobpyt.optimization.CostsFixedPSD method) (whobpyt.optimization.CostsMean method) (whobpyt.optimization.CostsPSD method) (whobpyt.optimization.CostsTS method) pyTS() (whobpyt.datatypes.timeseries.Timeseries method)

R

register_backward_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_buffer() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_forward_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_forward_pre_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_full_backward_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_full_backward_pre_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_load_state_dict_post_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

register_load_state_dict_pre_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_module() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_parameter() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_state_dict_post_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) register_state_dict_pre_hook() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) requires_grad_() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) reset() (whobpyt.datatypes.outputs.TrainingStats method)

S

save() (whobpyt.datatypes.outputs.TrainingStats method) (whobpyt.run.model_fitting.ModelFitting method) scalePSD() (whobpyt.optimization.CostsPSD method) set_extra_state() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) set_submodule() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) setModelParameters() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

setModelSCParameters() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) share_memory() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) simulate() (whobpyt.run.model_fitting.ModelFitting method) State variables state_dict() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) Structural connectivity (SC)

T

T_destination (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel attribute) Timeseries (class in whobpyt.datatypes.timeseries) to() (whobpyt.datatypes.parameter.Parameter method) (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) to_empty() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

train() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method) (whobpyt.run.model_fitting.ModelFitting method) training (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel attribute) Training statistics TrainingStats (class in whobpyt.datatypes.outputs) type() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

V

value() (whobpyt.datatypes.parameter.Parameter method)

W

Whole-brain model (WBM)

Windowed fitting windowedTensor() (whobpyt.datatypes.timeseries.Timeseries method)

X

xpu() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)

Z

zero_grad() (whobpyt.models.jansen_rit.jansen_rit.JansenRitModel method)